segName='   A'
seq="""
MET GLY HIS HIS HIS HIS HIS HIS SER HIS 
MET ASP LYS ARG LEU PHE LEU ASP PRO ASP 
THR ALA ILE GLU ARG LEU GLN ARG LEU GLN 
GLN ALA LEU GLU MET GLY VAL SER SER LEU 
MET ALA LEU VAL THR THR ASP TRP ARG CYS 
TYR GLY TYR MET GLU ARG HIS ILE ASN GLU 
ILE ARG THR ALA VAL ASP LYS VAL GLU LEU 
PHE LEU LYS GLU TYR LEU HIS PHE VAL LYS 
GLY ALA VAL ALA ASN ALA ALA CYS LEU PRO 
GLU LEU ILE LEU HIS ASN LYS MET LYS ARG 
GLU LEU GLN ARG VAL GLU ASP SER HIS GLN 
ILE LEU SER GLN THR SER HIS ASP LEU ASN 
GLU CYS SER TRP SER LEU ASN ILE LEU ALA 
ILE ASN LYS PRO GLN ASN LYS CYS ASP ASP 
LEU ASP ARG PHE VAL MET VAL ALA LYS THR 
VAL PRO ASP ASP ALA LYS GLN LEU THR THR 
THR ILE ASN THR ASN ALA GLU ALA LEU PHE 
ARG PRO GLY PRO GLY SER
"""
patch_list=[]
seqType='prot'
seqSplit = seq.split()
#print "finished reading ["+`len(seqSplit)`+"] residue(s) for a ["+seqType+"] type segi: ["+segName+"]"
