segName='   A'
seq="""
GLN GLY GLN GLU ASP GLU VAL VAL LEU VAL 
GLU GLY PRO THR LEU PRO GLU THR PRO ARG 
LEU PHE PRO LEU LYS ILE ARG CYS ARG ALA 
ASP LEU VAL ARG LEU PRO LEU ARG MET SER 
GLU PRO LEU GLN SER VAL VAL ASP HIS MET 
ALA THR HIS LEU GLY VAL SER PRO SER ARG 
ILE LEU LEU LEU PHE GLY GLU THR GLU LEU 
SER PRO THR ALA THR PRO ARG THR LEU LYS 
LEU GLY VAL ALA ASP ILE ILE ASP CYS VAL 
VAL LEU THR SER SER
"""
patch_list=[]
seqType='prot'
seqSplit = seq.split()
#print "finished reading ["+`len(seqSplit)`+"] residue(s) for a ["+seqType+"] type segi: ["+segName+"]"
