segName='   A'
seq="""
TYR ALA GLU GLY THR PHE ILE SER ASP TYR 
SER ILE ALA MET ASP LYS ILE HIS GLN GLN 
ASP PHE VAL ASN TRP LEU LEU ALA GLN LYS 
GLY LYS LYS ASN ASP TRP LYS HIS ASN ILE 
THR GLN
"""
patch_list=[]
seqType='prot'
seqSplit = seq.split()
#print "finished reading ["+`len(seqSplit)`+"] residue(s) for a ["+seqType+"] type segi: ["+segName+"]"
