segName='   A'
seq="""
MET GLY HIS HIS HIS HIS HIS HIS SER HIS 
GLY GLN GLN SER VAL SER ASN LYS LEU LEU 
ALA TRP SER GLY VAL LEU GLU TRP GLN GLU 
LYS PRO LYS PRO ALA SER VAL ASP ALA ASN 
THR LYS LEU THR ARG SER LEU PRO CYS GLN 
VAL TYR VAL ASN HIS GLY GLU ASN LEU LYS 
THR GLU GLN TRP PRO GLN LYS LEU ILE MET 
GLN LEU ILE PRO GLN GLN LEU LEU THR THR 
LEU GLY PRO LEU PHE ARG ASN SER ARG MET 
VAL GLN PHE HIS PHE THR ASN LYS ASP LEU 
GLU SER LEU LYS GLY LEU TYR ARG ILE MET 
GLY ASN GLY PHE ALA GLY CYS VAL HIS PHE 
PRO HIS THR ALA PRO CYS GLU VAL ARG VAL 
LEU MET LEU LEU TYR SER SER LYS LYS LYS 
ILE PHE MET GLY LEU ILE PRO TYR ASP GLN 
SER GLY PHE VAL ASN GLY ILE ARG GLN VAL 
ILE THR ASN
"""
patch_list=[]
seqType='prot'
seqSplit = seq.split()
#print "finished reading ["+`len(seqSplit)`+"] residue(s) for a ["+seqType+"] type segi: ["+segName+"]"
