segName='   A'
seq="""
MET SER GLN PHE GLU LYS GLN LYS GLU GLN 
GLY ASN SER LEU PHE LYS GLN GLY LEU TYR 
ARG GLU ALA VAL HIS CYS TYR ASP GLN LEU 
ILE THR ALA GLN PRO GLN ASN PRO VAL GLY 
TYR SER ASN LYS ALA MET ALA LEU ILE LYS 
LEU GLY GLU TYR THR GLN ALA ILE GLN MET 
CYS GLN GLN GLY LEU ARG TYR THR SER THR 
ALA GLU HIS VAL ALA ILE ARG SER LYS LEU 
GLN TYR ARG LEU GLU LEU ALA GLN GLY ALA 
VAL GLY SER VAL GLN ILE PRO VAL VAL GLU 
VAL ASP GLU LEU PRO GLU GLY TYR ASP ARG 
SER
"""
patch_list=[]
seqType='prot'
seqSplit = seq.split()
#print "finished reading ["+`len(seqSplit)`+"] residue(s) for a ["+seqType+"] type segi: ["+segName+"]"
