segName='   A'
seq="""
GLY HIS MET ALA GLU VAL LYS VAL LYS LEU 
PHE ALA ASN LEU ARG GLU ALA ALA GLY THR 
PRO GLU LEU PRO LEU SER GLY GLU LYS VAL 
ILE ASP VAL LEU LEU SER LEU THR ASP LYS 
TYR PRO ALA LEU LYS TYR VAL ILE PHE GLU 
LYS GLY ASP GLU LYS SER GLU ILE LEU ILE 
LEU CYS GLY SER ILE ASN ILE LEU ILE ASN 
GLY ASN ASN ILE ARG HIS LEU GLU GLY LEU 
GLU THR LEU LEU LYS ASP SER ASP GLU ILE 
GLY ILE LEU PRO PRO VAL SER GLY GLY
"""
patch_list=[]
seqType='prot'
seqSplit = seq.split()
#print "finished reading ["+`len(seqSplit)`+"] residue(s) for a ["+seqType+"] type segi: ["+segName+"]"
