segName='   A'
seq="""
GLY SER SER LEU GLN ASN ASN GLN ASP VAL 
SER PHE GLU ASN ILE GLN TRP SER ILE ASP 
PRO GLY ALA ASP LEU SER GLN TYR LYS MET 
ASP VAL THR VAL ILE ASP THR LYS ASP GLY 
SER GLN SER LYS LEU GLY GLY GLY GLY SER 
GLY GLY HIS MET GLY SER GLY GLY LEU SER 
TRP LYS ARG CYS ALA GLY CYS GLY GLY LYS 
ILE ALA ASP ARG PHE LEU LEU TYR ALA MET 
ASP SER TYR TRP HIS SER ARG CYS LEU LYS 
CYS SER SER CYS GLN ALA GLN LEU GLY ASP 
ILE GLY THR SER SER TYR THR LYS SER GLY 
MET ILE LEU CYS ARG ASN ASP TYR ILE ARG 
LEU PHE GLY
"""
patch_list=[]
seqType='prot'
seqSplit = seq.split()
#print "finished reading ["+`len(seqSplit)`+"] residue(s) for a ["+seqType+"] type segi: ["+segName+"]"
