segName='   A'
seq="""
SER ASP GLY GLY ALA GLN ASP CYS CYS LEU 
LYS TYR SER GLN ARG LYS ILE PRO ALA LYS 
VAL VAL ARG SER TYR ARG LYS GLN GLU PRO 
SER LEU GLY CYS SER ILE PRO ALA ILE LEU 
PHE LEU PRO ARG LYS ARG SER GLN ALA GLU 
LEU CYS ALA ASP PRO LYS GLU LEU TRP VAL 
GLN GLN LEU MET GLN HIS LEU ASP LYS THR 
PRO SER PRO GLN LYS PRO ALA GLN GLY CYS 
ARG LYS ASP ARG GLY ALA SER LYS THR GLY 
LYS LYS GLY LYS GLY SER LYS GLY CYS LYS 
ARG THR GLU ARG SER GLN THR PRO LYS GLY 
PRO LYS LEU
"""
patch_list=[]
seqType='prot'
seqSplit = seq.split()
#print "finished reading ["+`len(seqSplit)`+"] residue(s) for a ["+seqType+"] type segi: ["+segName+"]"
