segName='   A'
seq="""
GLY SER VAL VAL GLY GLY LEU GLY GLY TYR 
MET LEU GLY SER ALA MET SER ARG PRO MET 
ILE HIS PHE GLY ASN ASP TRP GLU ASP ARG 
TYR TYR ARG GLU ASN MET TYR ARG TYR PRO 
ASN GLN VAL TYR TYR ARG PRO VAL ASP GLN 
GLY SER ASN GLN ASN ASN PHE VAL HIS ASP 
CYS VAL ASN ILE THR ILE LYS GLN HIS THR 
VAL THR THR THR THR LYS GLY GLU ASN PHE 
THR GLU THR ASP VAL LYS MET MET GLU ARG 
VAL VAL GLU GLN MET CYS VAL THR GLN TYR 
GLN LYS GLU SER GLN ALA TYR TYR ASP GLY 
ARG ARG SER SER
"""
patch_list=[]
seqType='prot'
seqSplit = seq.split()
#print "finished reading ["+`len(seqSplit)`+"] residue(s) for a ["+seqType+"] type segi: ["+segName+"]"
