segName='   A'
seq="""
MET LYS ASP GLY THR TYR TYR ALA GLU ALA 
ASP ASP PHE ASP GLU SER GLY TRP LYS ASP 
THR VAL THR ILE GLU VAL LYS ASN GLY LYS 
ILE VAL SER VAL ASP TRP ASN ALA ILE ASN 
LYS ASP GLY GLY ASP ASP LYS ASP THR LEU 
SER ARG ASN GLY GLY TYR LYS MET VAL GLU 
TYR GLY GLY ALA GLN ALA GLU TRP HIS GLU 
GLN ALA GLU LYS VAL GLU ALA TYR LEU VAL 
GLU LYS GLN ASP PRO THR ASP ILE LYS TYR 
LYS ASP ASN ASP GLY HIS THR ASP ALA ILE 
SER GLY ALA THR ILE LYS VAL LYS LYS PHE 
PHE ASP LEU ALA GLN LYS ALA LEU LYS ASP 
ALA GLU LYS LEU GLU HIS HIS HIS HIS HIS 
HIS
"""
patch_list=[]
seqType='prot'
seqSplit = seq.split()
#print "finished reading ["+`len(seqSplit)`+"] residue(s) for a ["+seqType+"] type segi: ["+segName+"]"
