segName='   A'
seq="""
GLY SER THR THR LYS ARG VAL LEU TYR VAL 
GLY GLY LEU ALA GLU GLU VAL ASP ASP LYS 
VAL LEU HIS ALA ALA PHE ILE PRO PHE GLY 
ASP ILE THR ASP ILE GLN ILE PRO LEU ASP 
TYR GLU THR GLU LYS HIS ARG GLY PHE ALA 
PHE VAL GLU PHE GLU LEU ALA GLU ASP ALA 
ALA ALA ALA ILE ASP ASN MET ASN GLU SER 
GLU LEU PHE GLY ARG THR ILE ARG VAL ASN 
LEU ALA LYS
"""
patch_list=[]
seqType='prot'
seqSplit = seq.split()
#print "finished reading ["+`len(seqSplit)`+"] residue(s) for a ["+seqType+"] type segi: ["+segName+"]"
