segName='   A'
seq="""
MET ASP GLU ASP ALA THR ILE THR TYR VAL 
ASP ASP ASP LYS GLY GLY ALA GLN VAL GLY 
ASP ILE VAL THR VAL THR GLY LYS THR ASP 
ASP SER THR THR TYR THR VAL THR ILE PRO 
ASP GLY TYR GLU TYR VAL GLY THR ASP GLY 
GLY VAL VAL SER SER ASP GLY LYS THR VAL 
THR ILE THR PHE ALA ALA ASP ASP SER ASP 
ASN VAL VAL ILE HIS LEU LYS HIS GLY LEU 
GLU HIS HIS HIS HIS HIS HIS
"""
patch_list=[]
seqType='prot'
seqSplit = seq.split()
#print "finished reading ["+`len(seqSplit)`+"] residue(s) for a ["+seqType+"] type segi: ["+segName+"]"
