segName='   A'
seq="""
SER LEU THR ASP ILE LEU SER PRO SER ASP 
ILE ALA ALA ALA LEU ARG ASP CYS GLN ALA 
PRO ASP SER PHE SER PRO LYS LYS PHE PHE 
GLN ILE SER GLY MET SER LYS LYS SER SER 
SER GLN LEU LYS GLU ILE PHE ARG ILE LEU 
ASP ASN ASP GLN SER GLY PHE ILE GLU GLU 
ASP GLU LEU LYS TYR PHE LEU GLN ARG PHE 
GLU SER GLY ALA ARG VAL LEU THR ALA SER 
GLU THR LYS THR PHE LEU ALA ALA ALA ASP 
HIS ASP GLY ASP GLY LYS ILE GLY ALA GLU 
GLU PHE GLN GLU MET VAL GLN SER
"""
patch_list=[]
seqType='prot'
seqSplit = seq.split()
#print "finished reading ["+`len(seqSplit)`+"] residue(s) for a ["+seqType+"] type segi: ["+segName+"]"
