segName='   A'
seq="""
MET LYS VAL PHE LYS ARG VAL ALA GLY ILE 
LYS ASP LYS ALA ALA ILE LYS THR LEU ILE 
SER ALA ALA TYR ARG GLN ILE PHE GLU ARG 
ASP ILE ALA PRO TYR ILE ALA GLN ASN GLU 
PHE SER GLY TRP GLU SER LYS LEU GLY ASN 
GLY GLU ILE THR VAL LYS GLU PHE ILE GLU 
GLY LEU GLY TYR SER ASN LEU TYR LEU LYS 
GLU PHE TYR THR PRO TYR PRO ASN THR LYS 
VAL ILE GLU LEU GLY THR LYS HIS PHE LEU 
GLY ARG ALA PRO ILE ASP GLN ALA GLU ILE 
ARG LYS TYR ASN GLN ILE LEU ALA THR GLN 
GLY ILE ARG ALA PHE ILE ASN ALA LEU VAL 
ASN SER GLN GLU TYR ASN GLU VAL PHE GLY 
GLU ASP THR VAL PRO TYR ARG ARG PHE PRO 
THR LEU GLU HIS HIS HIS HIS HIS HIS
"""
patch_list=[]
seqType='prot'
seqSplit = seq.split()
#print "finished reading ["+`len(seqSplit)`+"] residue(s) for a ["+seqType+"] type segi: ["+segName+"]"
