segName='   B'
seq="""
GLY LEU PRO ASP VAL ALA GLN ARG LEU MET 
GLN HIS LEU ALA GLU HIS GLY ILE GLN PRO 
ALA ARG ASN MET ALA GLU HIS ILE PRO PRO 
ALA PRO ASN TRP PRO ALA PRO THR PRO PRO 
VAL GLN ASN GLU GLN SER ARG PRO
"""
patch_list=[]
seqType='prot'
seqSplit = seq.split()
#print "finished reading ["+`len(seqSplit)`+"] residue(s) for a ["+seqType+"] type segi: ["+segName+"]"
