segName='   A'
seq="""
GLY SER LEU ARG PRO GLY ASP CYS GLU VAL 
CYS ILE SER TYR LEU GLY ARG PHE TYR GLN 
ASP LEU LYS ASP ARG ASP VAL THR PHE SER 
PRO ALA THR ILE GLU ASN GLU LEU ILE LYS 
PHE CYS ARG GLU ALA ARG GLY LYS GLU ASN 
ARG LEU CYS TYR TYR ILE GLY ALA THR ASP 
ASP ALA ALA THR LYS ILE ILE ASN GLU VAL 
SER LYS PRO LEU ALA HIS HIS ILE PRO VAL 
GLU LYS ILE CYS GLU LYS LEU LYS LYS LYS 
ASP SER GLN ILE CYS GLU LEU LYS TYR ASP 
LYS GLN ILE ASP LEU SER THR VAL ASP LEU 
LYS LYS LEU ARG VAL LYS GLU LEU LYS LYS 
ILE LEU ASP ASP TRP GLY GLU THR CYS LYS 
GLY CYS ALA GLU LYS SER ASP TYR ILE ARG 
LYS ILE ASN GLU LEU MET PRO LYS TYR ALA 
PRO LYS ALA ALA SER ALA ARG THR ASP LEU 
"""
patch_list=[]
seqType='prot'
seqSplit = seq.split()
#print "finished reading ["+`len(seqSplit)`+"] residue(s) for a ["+seqType+"] type segi: ["+segName+"]"
