segName='   A'
seq="""
GLY HIS MET GLY ILE THR ARG ASP VAL GLN 
VAL PRO ASP VAL ARG GLY GLN SER SER ALA 
ASP ALA ILE ALA THR LEU GLN ASN ARG GLY 
PHE LYS ILE ARG THR LEU GLN LYS PRO ASP 
SER THR ILE PRO PRO ASP HIS VAL ILE GLY 
THR ASP PRO ALA ALA ASN THR SER VAL SER 
ALA GLY ASP GLU ILE THR VAL ASN VAL SER 
THR GLY PRO GLU GLN ARG GLU ILE PRO ASP 
VAL SER THR LEU THR TYR ALA GLU ALA VAL 
LYS LYS LEU THR ALA ALA GLY PHE GLY ARG 
PHE LYS GLN ALA ASN SER PRO SER THR PRO 
GLU LEU VAL GLY LYS VAL ILE GLY THR ASN 
PRO PRO ALA ASN GLN THR SER ALA ILE THR 
ASN VAL VAL ILE ILE ILE VAL GLY SER GLY 
"""
patch_list=[]
seqType='prot'
seqSplit = seq.split()
#print "finished reading ["+`len(seqSplit)`+"] residue(s) for a ["+seqType+"] type segi: ["+segName+"]"
