segName='   A'
seq="""
SER VAL VAL GLY GLY LEU GLY GLY TYR MET 
LEU GLY SER ALA MET SER ARG PRO MET ILE 
HIS PHE GLY ASN ASP TRP GLU ASP ARG TYR 
TYR ARG GLU ASN MET TYR ARG TYR PRO ASN 
GLN VAL TYR TYR ARG PRO VAL SER GLN TYR 
SER ASN GLN LYS ASN PHE VAL HIS ASP CYS 
VAL ASN ILE THR ILE LYS GLN HIS THR VAL 
THR THR THR THR LYS GLY GLU ASN PHE THR 
GLU THR ASP VAL LYS MET MET GLU ARG VAL 
VAL GLU GLN MET CYS VAL THR GLN TYR GLN 
LYS GLU SER GLN ALA TYR TYR ASP GLY ARG 
ARG SER SER
"""
patch_list=[]
seqType='prot'
seqSplit = seq.split()
#print "finished reading ["+`len(seqSplit)`+"] residue(s) for a ["+seqType+"] type segi: ["+segName+"]"
