segName='   A'
seq="""
MET SER LEU LYS SER ASP GLU VAL PHE ALA 
LYS ILE ALA LYS ARG LEU GLU SER ILE ASP 
PRO ALA ASN ARG GLN VAL GLU HIS VAL TYR 
LYS PHE ARG ILE THR GLN GLY GLY LYS VAL 
VAL LYS ASN TRP VAL MET ASP LEU LYS ASN 
VAL LYS LEU VAL GLU SER ASP ASP ALA ALA 
GLU ALA THR LEU THR MET GLU ASP ASP ILE 
MET PHE ALA ILE GLY THR GLY ALA LEU PRO 
ALA LYS GLU ALA MET ALA GLN ASP LYS MET 
GLU VAL ASP GLY GLN VAL GLU LEU ILE PHE 
LEU LEU GLU PRO PHE ILE ALA SER LEU LYS 
"""
patch_list=[]
seqType='prot'
seqSplit = seq.split()
#print "finished reading ["+`len(seqSplit)`+"] residue(s) for a ["+seqType+"] type segi: ["+segName+"]"
