segName='   A'
seq="""
ALA SER LEU TYR GLU LYS LEU GLY GLY ALA 
ALA ALA VAL ASP LEU ALA VAL GLU LYS PHE 
TYR GLY LYS VAL LEU ALA ASP GLU ARG VAL 
ASN ARG PHE PHE VAL ASN THR ASP MET ALA 
LYS GLN LYS GLN HIS GLN LYS ASP PHE MET 
THR TYR ALA PHE GLY GLY THR ASP ARG PHE 
PRO GLY ARG SER MET ARG ALA ALA HIS GLN 
ASP LEU VAL GLU ASN ALA GLY LEU THR ASP 
VAL HIS PHE ASP ALA ILE ALA GLU ASN LEU 
VAL LEU THR LEU GLN GLU LEU ASN VAL SER 
GLN ASP LEU ILE ASP GLU VAL VAL THR ILE 
VAL GLY SER VAL GLN HIS ARG ASN ASP VAL 
LEU ASN ARG
"""
patch_list=[]
seqType='prot'
seqSplit = seq.split()
#print "finished reading ["+`len(seqSplit)`+"] residue(s) for a ["+seqType+"] type segi: ["+segName+"]"
