segName='   A'
seq="""
ALA ALA THR GLN GLU GLU ILE VAL ALA GLY 
LEU ALA GLU ILE VAL ASN GLU ILE ALA GLY 
ILE PRO VAL GLU ASP VAL LYS LEU ASP LYS 
SER PHE THR ASP ASP LEU ASP VAL ASP SER 
LEU SER MET VAL GLU VAL VAL VAL ALA ALA 
GLU GLU ARG PHE ASP VAL LYS ILE PRO ASP 
ASP ASP VAL LYS ASN LEU LYS THR VAL GLY 
ASP ALA THR LYS TYR ILE LEU ASP HIS GLN 
ALA
"""
patch_list=[]
seqType='prot'
seqSplit = seq.split()
#print "finished reading ["+`len(seqSplit)`+"] residue(s) for a ["+seqType+"] type segi: ["+segName+"]"
