segName='   A'
seq="""
GLY ALA MET GLY SER GLY ALA ARG GLN LEU 
SER LYS LEU LYS ARG PHE LEU THR THR LEU 
GLN GLN PHE GLY ASN ASP ILE SER PRO GLU 
ILE GLY GLU ARG VAL ARG THR LEU VAL LEU 
GLY LEU VAL ASN SER THR LEU THR ILE GLU 
GLU PHE HIS SER LYS LEU GLN GLU ALA THR 
ASN PHE PRO LEU ARG PRO PHE VAL ILE PRO 
PHE LEU LYS ALA ASN LEU PRO LEU LEU GLN 
ARG GLU LEU LEU HIS CYS ALA ARG LEU ALA 
LYS GLN ASN PRO ALA GLN TYR LEU ALA GLN 
HIS GLU GLN
"""
patch_list=[]
seqType='prot'
seqSplit = seq.split()
#print "finished reading ["+`len(seqSplit)`+"] residue(s) for a ["+seqType+"] type segi: ["+segName+"]"
