segName='   A'
seq="""
MET ASN GLU ALA LYS GLY VAL TYR VAL MET 
SER VAL LEU PRO ASN MET PRO ALA ALA GLY 
ARG LEU GLU ALA GLY ASP ARG ILE ALA ALA 
ILE ASP GLY GLN PRO ILE ASN THR SER GLU 
GLN ILE VAL SER TYR VAL ARG GLU LYS GLN 
ALA GLY ASP ARG VAL ARG VAL THR PHE ILE 
ARG ASP ARG LYS GLN HIS GLU ALA GLU LEU 
VAL LEU LYS PRO PHE PRO HIS HIS PRO ASN 
GLN ILE GLY LEU GLY VAL THR LEU GLU HIS 
HIS HIS HIS HIS
"""
patch_list=[]
seqType='prot'
seqSplit = seq.split()
#print "finished reading ["+`len(seqSplit)`+"] residue(s) for a ["+seqType+"] type segi: ["+segName+"]"
