segName='   A'
seq="""
MET GLY HIS HIS HIS HIS HIS HIS SER HIS 
MET LYS PHE LEU VAL GLU ASN LEU ASN GLY 
SER SER PHE GLU LEU GLU VAL ASP TYR ARG 
ASP THR LEU LEU VAL VAL LYS GLN LYS ILE 
GLU ARG SER GLN HIS ILE PRO VAL SER LYS 
GLN THR LEU ILE VAL ASP GLY ILE VAL ILE 
LEU ARG GLU ASP LEU THR VAL GLU GLN CYS 
GLN ILE VAL PRO THR SER ASP ILE GLN LEU 
GLU VAL SER SER
"""
patch_list=[]
seqType='prot'
seqSplit = seq.split()
#print "finished reading ["+`len(seqSplit)`+"] residue(s) for a ["+seqType+"] type segi: ["+segName+"]"
