segName='   A'
seq="""
MET ASP GLN PHE LEU VAL GLN ILE PHE ALA 
VAL ILE HIS GLN ILE PRO LYS GLY LYS VAL 
SER THR TYR GLY GLU ILE ALA LYS MET ALA 
GLY TYR PRO GLY TYR ALA ARG HIS VAL GLY 
LYS ALA LEU GLY ASN LEU PRO GLU GLY SER 
LYS LEU PRO TRP PHE ARG VAL ILE ASN SER 
GLN GLY LYS ILE SER LEU LYS GLY ARG ASP 
LEU ASP ARG GLN LYS GLN LYS LEU GLU ALA 
GLU GLY ILE GLU VAL SER GLU ILE GLY LYS 
ILE ALA LEU ARG LYS TYR LYS TRP GLN PRO 
LEU GLU HIS HIS HIS HIS HIS HIS
"""
patch_list=[]
seqType='prot'
seqSplit = seq.split()
#print "finished reading ["+`len(seqSplit)`+"] residue(s) for a ["+seqType+"] type segi: ["+segName+"]"
