segName='   A'
seq="""
MET LYS GLY ILE ILE PHE ASN VAL LEU GLU 
ASP MET VAL VAL ALA GLN CYS GLY MET SER 
VAL TRP ASN GLU LEU LEU GLU LYS HIS ALA 
PRO LYS ASP ARG VAL TYR VAL SER ALA LYS 
SER TYR ALA GLU SER GLU LEU PHE SER ILE 
VAL GLN ASP VAL ALA GLN ARG LEU ASN MET 
PRO ILE GLN ASP VAL VAL LYS ALA PHE GLY 
GLN PHE LEU PHE ASN GLY LEU ALA SER ARG 
HIS THR ASP VAL VAL ASP LYS PHE ASP ASP 
PHE THR SER LEU VAL MET GLY ILE HIS ASP 
VAL ILE HIS LEU GLU VAL ASN LYS LEU TYR 
HIS GLU PRO SER LEU PRO HIS ILE ASN GLY 
GLN LEU LEU PRO ASN ASN GLN ILE ALA LEU 
ARG TYR SER SER PRO ARG ARG LEU CYS PHE 
CYS ALA GLU GLY LEU LEU PHE GLY ALA ALA 
GLN HIS PHE GLN GLN LYS ILE GLN ILE SER 
HIS ASP THR CYS MET HIS THR GLY ALA ASP 
HIS CYS MET LEU ILE ILE GLU LEU GLN ASN 
ASP
"""
patch_list=[]
seqType='prot'
seqSplit = seq.split()
#print "finished reading ["+`len(seqSplit)`+"] residue(s) for a ["+seqType+"] type segi: ["+segName+"]"
