segName='   A'
seq="""
MET GLY SER SER HIS HIS HIS HIS HIS HIS 
SER SER GLY LEU VAL PRO ARG GLY SER HIS 
MET ALA SER MET THR GLY GLY GLN GLN MET 
GLY ARG GLY SER GLY ASP SER GLU PHE THR 
VAL GLN SER THR THR GLY HIS CYS VAL HIS 
MET ARG GLY LEU PRO TYR LYS ALA THR GLU 
ASN ASP ILE TYR ASN PHE PHE SER PRO LEU 
ASN PRO VAL ARG VAL HIS ILE GLU ILE GLY 
PRO ASP GLY ARG VAL THR GLY GLU ALA ASP 
VAL GLU PHE ALA THR HIS GLU GLU ALA VAL 
ALA ALA MET SER LYS ASP ARG ALA ASN MET 
GLN HIS ARG TYR ILE GLU LEU PHE LEU ASN 
SER THR THR GLY ALA SER ASN GLY ALA TYR 
SER SER GLN VAL MET GLN GLY MET GLY
"""
patch_list=[]
seqType='prot'
seqSplit = seq.split()
#print "finished reading ["+`len(seqSplit)`+"] residue(s) for a ["+seqType+"] type segi: ["+segName+"]"
