segName='   A'
seq="""
MET GLY SER SER HIS HIS HIS HIS HIS HIS 
SER SER GLY LEU VAL PRO ARG GLY SER MET 
ALA ALA ALA VAL PRO GLN ARG ALA TRP THR 
VAL GLU GLN LEU ARG SER GLU GLN LEU PRO 
LYS LYS ASP ILE ILE LYS PHE LEU GLN GLU 
HIS GLY SER ASP SER PHE LEU ALA GLU HIS 
LYS LEU LEU GLY ASN ILE LYS ASN VAL ALA 
LYS THR ALA ASN LYS ASP HIS LEU VAL THR 
ALA TYR ASN HIS LEU PHE GLU THR LYS ARG 
PHE LYS
"""
patch_list=[]
seqType='prot'
seqSplit = seq.split()
#print "finished reading ["+`len(seqSplit)`+"] residue(s) for a ["+seqType+"] type segi: ["+segName+"]"
