segName='   A'
seq="""
GLY PRO LEU GLY SER ASP ASP VAL GLU TRP 
VAL VAL GLY LYS ASP LYS PRO THR TYR ASP 
GLU ILE PHE TYR THR LEU SER PRO VAL ASN 
GLY LYS ILE THR GLY ALA ASN ALA LYS LYS 
GLU MET VAL LYS SER LYS LEU PRO ASN THR 
VAL LEU GLY LYS ILE TRP LYS LEU ALA ASP 
VAL ASP LYS ASP GLY LEU LEU ASP ASP GLU 
GLU PHE ALA LEU ALA ASN HIS LEU ILE LYS 
VAL LYS LEU GLU GLY HIS GLU LEU PRO ALA 
ASP LEU PRO PRO HIS LEU VAL PRO PRO SER 
LYS ARG ARG HIS GLU
"""
patch_list=[]
seqType='prot'
seqSplit = seq.split()
#print "finished reading ["+`len(seqSplit)`+"] residue(s) for a ["+seqType+"] type segi: ["+segName+"]"
