segName='   B'
seq="""
MET GLN THR GLN GLU GLN SER GLN LYS LYS 
LYS GLN LYS ALA VAL PHE GLY ILE TYR MET 
ASP LYS ASP LEU LYS THR ARG LEU LYS VAL 
TYR CYS ALA LYS ASN ASN LEU GLN LEU THR 
GLN ALA ILE GLU GLU ALA ILE LYS GLU TYR 
LEU GLN LYS ARG ASN GLY
"""
patch_list=[]
seqType='prot'
seqSplit = seq.split()
#print "finished reading ["+`len(seqSplit)`+"] residue(s) for a ["+seqType+"] type segi: ["+segName+"]"
