segName='   A'
seq="""
THR THR TYR LYS LEU ILE LEU ASN LEU LYS 
GLN ALA LYS GLU GLU ALA ILE LYS GLU LEU 
VAL ASP ALA GLY THR ALA GLU LYS TYR ILE 
LYS LEU ILE ALA ASN ALA LYS THR VAL GLU 
GLY VAL TRP THR LEU LYS ASP GLU ILE LYS 
THR PHE THR VAL THR GLU
"""
patch_list=[]
seqType='prot'
seqSplit = seq.split()
#print "finished reading ["+`len(seqSplit)`+"] residue(s) for a ["+seqType+"] type segi: ["+segName+"]"
