segName='   A'
seq="""
MET VAL ASP GLN ASN PRO GLU GLU TYR TYR 
LEU GLU GLY VAL LEU GLN TYR ASP ALA GLY 
ASN TYR THR GLU SER ILE ASP LEU PHE GLU 
LYS ALA ILE GLN LEU ASP PRO GLU GLU SER 
LYS TYR TRP LEU MET LYS GLY LYS ALA LEU 
TYR ASN LEU GLU ARG TYR GLU GLU ALA VAL 
ASP CYS TYR ASN TYR VAL ILE ASN VAL ILE 
GLU ASP GLU TYR ASN LYS ASP VAL TRP ALA 
ALA LYS ALA ASP ALA LEU ARG TYR ILE GLU 
GLY LYS GLU VAL GLU ALA GLU ILE ALA GLU 
ALA ARG ALA LYS LEU GLU HIS HIS HIS HIS 
HIS HIS
"""
patch_list=[]
seqType='prot'
seqSplit = seq.split()
#print "finished reading ["+`len(seqSplit)`+"] residue(s) for a ["+seqType+"] type segi: ["+segName+"]"
