segName='   A'
seq="""
MET GLU PRO GLN LEU THR LYS ILE VAL ASP 
ILE VAL GLU ASN GLY GLN TRP ALA ASN LEU 
LYS ALA LYS VAL ILE GLN LEU TRP GLU ASN 
THR HIS GLU SER ILE SER GLN VAL GLY LEU 
LEU GLY ASP GLU THR GLY ILE ILE LYS PHE 
THR ILE TRP LYS ASN ALA GLU LEU PRO LEU 
LEU GLU GLN GLY GLU SER TYR LEU LEU ARG 
SER VAL VAL VAL GLY GLU TYR ASN ASP ARG 
PHE GLN VAL GLN VAL ASN LYS ASN SER SER 
ILE GLU LYS LEU SER GLU PRO ILE GLU VAL 
GLY LEU GLU HIS HIS HIS HIS HIS HIS
"""
patch_list=[]
seqType='prot'
seqSplit = seq.split()
#print "finished reading ["+`len(seqSplit)`+"] residue(s) for a ["+seqType+"] type segi: ["+segName+"]"
