segName='   A'
seq="""
MET LYS LEU SER ARG LEU VAL PRO GLY VAL 
PRO ALA ARG ILE LYS ARG LEU GLU VAL SER 
GLY GLU LEU HIS GLU LYS LEU VAL GLY MET 
GLY PHE VAL PRO GLY GLU GLU ILE GLU ILE 
VAL GLN VAL ALA PRO LEU GLY ASP PRO ILE 
VAL CYS LYS ILE GLY ASN ARG ASN ILE THR 
LEU ARG LYS ARG GLU ALA ASP LEU ILE GLU 
VAL GLU VAL VAL GLY GLY GLU LEU PRO LEU 
ILE LEU ALA ASP ASP GLY THR TYR GLU ILE 
THR LYS LEU ASN GLY GLY ARG ARG PHE LEU 
PHE ARG MET LYS ASN LEU GLY ILE GLU SER 
GLY LYS LYS ILE GLN VAL SER GLY ARG ARG 
TYR TYR ILE GLU GLY ARG GLU ILE ASP LEU 
GLY TYR GLY GLU ALA THR LYS ILE TRP VAL 
ARG ARG VAL SER ASP ALA GLY GLU GLU SER 
HIS PRO GLN LYS LEU GLU HIS HIS HIS HIS 
HIS HIS
"""
patch_list=[]
seqType='prot'
seqSplit = seq.split()
#print "finished reading ["+`len(seqSplit)`+"] residue(s) for a ["+seqType+"] type segi: ["+segName+"]"
