segName='   A'
seq="""
MET THR LYS GLY ILE GLY LEU ASN GLU VAL 
GLU ILE LYS SER LYS VAL LYS VAL ILE GLY 
ILE VAL PRO GLU SER LYS VAL ARG ARG LYS 
ILE MET ASP MET GLY ILE VAL ARG GLY THR 
GLU ILE TYR ILE GLU GLY LYS ALA PRO MET 
GLY ASP PRO ILE ALA LEU ARG LEU ARG GLY 
TYR SER LEU SER LEU ARG LYS SER GLU ALA 
LYS ASP ILE LEU VAL GLU VAL LEU LEU GLU 
HIS HIS HIS HIS HIS HIS
"""
patch_list=[]
seqType='prot'
seqSplit = seq.split()
#print "finished reading ["+`len(seqSplit)`+"] residue(s) for a ["+seqType+"] type segi: ["+segName+"]"
