segName='   A'
seq="""
GLN GLY HIS MET PHE GLU PRO GLY HIS LEU 
HIS LEU VAL SER LEU PRO GLY LEU ASP GLN 
GLN ASP ILE ASN ILE HIS ILE ARG TYR GLU 
VAL ARG GLN ASN ALA GLU SER GLY ALA TYR 
VAL HIS PHE ASP MET ASP GLY GLU ILE ASP 
GLY LYS PRO PHE SER ASP SER PHE GLU LEU 
PRO ARG ASP THR ALA PHE ASN PHE ALA SER 
ASP ALA THR ARG VAL ALA GLN LYS HIS GLY 
LEU HIS PRO LYS PHE GLY ALA ILE THR ARG 
VAL HIS LYS GLU TYR ASP ALA MET PHE GLU 
ASP ILE ARG ALA LYS LEU HIS ALA HIS PRO 
GLY GLU PRO VAL ASP LEU GLU ARG ILE ILE 
ARG HIS GLU GLY SER
"""
patch_list=[]
seqType='prot'
seqSplit = seq.split()
#print "finished reading ["+`len(seqSplit)`+"] residue(s) for a ["+seqType+"] type segi: ["+segName+"]"
