segName='   A'
seq="""
GLY SER PHE THR MET SER TYR CYS ARG GLN 
GLU GLY LYS ASP ARG ILE ILE PHE VAL THR 
LYS GLU ASP HIS GLU THR PRO SER SER ALA 
GLU LEU VAL ALA ASP ASP PRO ASN ASP PRO 
TYR GLU GLU HIS GLY LEU ILE LEU PRO ASN 
GLY ASN ILE ASN TRP ASN CYS PRO CYS LEU 
GLY GLY MET ALA SER GLY PRO CYS GLY GLU 
GLN PHE LYS SER ALA PHE SER CYS PHE HIS 
TYR SER THR GLU GLU ILE LYS GLY SER ASP 
CYS VAL ASP GLN PHE ARG ALA MET GLN GLU 
CYS MET GLN LYS TYR PRO ASP LEU TYR PRO 
GLN GLU ASP GLU ASP GLU GLU GLU GLU ARG 
GLU LYS LYS PRO ALA GLU GLN ALA GLU GLU 
THR ALA PRO ILE GLU ALA THR ALA THR LYS 
GLU GLU GLU GLY SER SER
"""
patch_list=[]
seqType='prot'
seqSplit = seq.split()
#print "finished reading ["+`len(seqSplit)`+"] residue(s) for a ["+seqType+"] type segi: ["+segName+"]"
