segName='   A'
seq="""
GLY PRO GLU ASP THR LEU PRO PHE LEU LYS 
CYS TYR CYS SER GLY HIS CYS PRO ASP ASP 
ALA ILE ASN ASN THR CYS ILE THR ASN GLY 
HIS CYS PHE ALA ILE ILE GLU GLU ASP ASP 
GLN GLY GLU THR THR LEU ALA SER GLY CYS 
MET LYS TYR GLU GLY SER ASP PHE GLN CYS 
LYS ASP SER PRO LYS ALA GLN LEU ARG ARG 
THR ILE GLU CYS CYS ARG THR ASN LEU CYS 
ASN GLN TYR LEU GLN PRO THR LEU PRO PRO 
VAL VAL ILE GLY PRO PHE PHE ASP GLY SER 
ILE ARG
"""
patch_list=[]
seqType='prot'
seqSplit = seq.split()
#print "finished reading ["+`len(seqSplit)`+"] residue(s) for a ["+seqType+"] type segi: ["+segName+"]"
