segName='   A'
seq="""
MET PRO HIS ASN SER ILE ARG SER GLY HIS 
GLY GLY LEU ASN GLN LEU GLY GLY ALA PHE 
VAL ASN GLY ARG PRO LEU PRO GLU VAL VAL 
ARG GLN ARG ILE VAL ASP LEU ALA HIS GLN 
GLY VAL ARG PRO CYS ASP ILE SER ARG GLN 
LEU ARG VAL SER HIS GLY CYS VAL SER LYS 
ILE LEU GLY ARG TYR TYR GLU THR GLY SER 
ILE ARG PRO GLY VAL ILE GLY GLY SER LYS 
PRO LYS VAL ALA THR PRO LYS VAL VAL GLU 
LYS ILE GLY ASP TYR LYS ARG GLN ASN PRO 
THR MET PHE ALA TRP GLU ILE ARG ASP ARG 
LEU LEU ALA GLU GLY VAL CYS ASP ASN ASP 
THR VAL PRO SER VAL SER SER ILE ASN ARG 
ILE ILE ARG THR LYS VAL GLN GLN PRO PHE 
ASN LEU PRO MET ASP SER GLY ALA PRO GLY 
GLY GLY SER HIS HIS HIS HIS HIS HIS
"""
patch_list=[]
seqType='prot'
seqSplit = seq.split()
#print "finished reading ["+`len(seqSplit)`+"] residue(s) for a ["+seqType+"] type segi: ["+segName+"]"
