segName='   A'
seq="""
MET GLU ILE ILE ALA ILE SER GLU THR PRO 
ASN HIS ASN THR MET LYS VAL SER LEU SER 
GLU PRO ARG GLN ASP ASN SER PHE THR THR 
TYR THR ALA ALA GLN GLU GLY GLN PRO GLU 
PHE ILE ASN ARG LEU PHE GLU ILE GLU GLY 
VAL LYS SER ILE PHE TYR VAL LEU ASP PHE 
ILE SER ILE ASP LYS GLU ASP ASN ALA ASN 
TRP ASN GLU LEU LEU PRO GLN ILE GLU ASN 
THR PHE ALA LYS SER ASN LEU GLU HIS HIS 
HIS HIS HIS HIS
"""
patch_list=[]
seqType='prot'
seqSplit = seq.split()
#print "finished reading ["+`len(seqSplit)`+"] residue(s) for a ["+seqType+"] type segi: ["+segName+"]"
