segName='   A'
seq="""
MET ALA LYS ALA GLN PRO ILE GLU ILE ALA 
GLY HIS GLU PHE ALA ARG LYS ALA ASP ALA 
LEU ALA PHE MET LYS VAL MET LEU ASN ARG 
TYR ARG PRO GLY ASP ILE VAL SER THR VAL 
ASP GLY ALA PHE LEU VAL GLU ALA LEU LYS 
ARG HIS PRO ASP ALA THR SER LYS ILE GLY 
PRO GLY VAL ARG ASN PHE GLU VAL ARG SER 
ALA ASP TYR GLY THR GLN CYS PHE TRP ILE 
LEU ARG THR ASP GLY SER GLU GLU ARG PHE 
SER TYR LYS LYS CYS VAL LEU GLU HIS HIS 
HIS HIS HIS HIS
"""
patch_list=[]
seqType='prot'
seqSplit = seq.split()
#print "finished reading ["+`len(seqSplit)`+"] residue(s) for a ["+seqType+"] type segi: ["+segName+"]"
