segName='   A'
seq="""
MET GLU HIS HIS HIS HIS HIS HIS GLU LEU 
LYS ASN SER ILE SER ASP TYR THR GLU ALA 
GLU PHE VAL GLN LEU LEU LYS GLU ILE GLU 
LYS GLU ASN VAL ALA ALA THR ASP ASP VAL 
LEU ASP VAL LEU LEU GLU HIS PHE VAL LYS 
ILE THR GLU HIS PRO ASP GLY THR ALA LEU 
ILE TYR GLU ALA ALA ALA ARG ALA ALA ALA 
ASN PRO GLY GLY ASP GLY GLY GLY PRO GLU 
GLY ILE VAL LYS GLU ILE LYS GLU TRP ARG 
ALA ALA ASN GLY LYS PRO GLY PHE LYS GLN 
GLY
"""
patch_list=[]
seqType='prot'
seqSplit = seq.split()
#print "finished reading ["+`len(seqSplit)`+"] residue(s) for a ["+seqType+"] type segi: ["+segName+"]"
