segName='   A'
seq="""
GLY PRO LEU GLY SER PRO TRP ALA VAL LYS 
PRO GLU ASP LYS ALA LYS TYR ASP ALA ILE 
PHE ASP SER LEU SER PRO VAL ASN GLY PHE 
LEU SER GLY ASP LYS VAL LYS PRO VAL LEU 
LEU ASN SER LYS LEU PRO VAL ASP ILE LEU 
GLY ARG VAL TRP GLU LEU SER ASP ILE ASP 
HIS ASP GLY MET LEU ASP ARG ASP GLU PHE 
ALA VAL ALA MET PHE LEU VAL TYR CYS ALA 
LEU GLU LYS GLU PRO VAL PRO MET SER LEU 
PRO PRO ALA LEU VAL PRO PRO SER LYS ARG 
"""
patch_list=[]
seqType='prot'
seqSplit = seq.split()
#print "finished reading ["+`len(seqSplit)`+"] residue(s) for a ["+seqType+"] type segi: ["+segName+"]"
