segName='   A'
seq="""
MET HIS HIS HIS HIS HIS HIS ALA MET GLY 
THR LYS LYS SER ALA ALA GLU ALA SER LYS 
LYS PRO ARG GLN LYS ARG THR ALA THR LYS 
GLN TYR ASN VAL THR GLN ALA PHE GLY ARG 
ARG GLY PRO GLU GLN THR GLN GLY ASN PHE 
GLY ASP GLN ASP LEU ILE ARG GLN GLY THR 
ASP TYR LYS HIS TRP PRO GLN ILE ALA GLN 
PHE ALA PRO SER ALA SER ALA PHE PHE GLY 
MET SER ARG ILE GLY MET GLU VAL THR PRO 
SER GLY THR TRP LEU THR TYR HIS GLY ALA 
ILE LYS LEU ASP ASP LYS ASP PRO GLN PHE 
LYS ASP ASN VAL ILE LEU LEU ASN LYS HIS 
ILE ASP ALA TYR LYS THR PHE PRO
"""
patch_list=[]
seqType='prot'
seqSplit = seq.split()
#print "finished reading ["+`len(seqSplit)`+"] residue(s) for a ["+seqType+"] type segi: ["+segName+"]"
