segName='   A'
seq="""
MET SER GLU ALA PRO LYS LYS ARG TRP TYR 
VAL VAL GLN ALA PHE SER GLY PHE GLU GLY 
ARG VAL ALA THR SER LEU ARG GLU HIS ILE 
LYS LEU HIS ASN MET GLU ASP LEU PHE GLY 
GLU VAL MET VAL PRO THR GLU GLU VAL VAL 
GLU ILE ARG GLY GLY GLN ARG ARG LYS SER 
GLU ARG LYS PHE PHE PRO GLY TYR VAL LEU 
VAL GLN MET VAL MET ASN ASP ALA SER TRP 
HIS LEU VAL ARG SER VAL PRO ARG VAL MET 
GLY PHE ILE GLY GLY THR SER ASP ARG PRO 
ALA PRO ILE SER ASP LYS GLU VAL ASP ALA 
ILE MET ASN ARG LEU GLN GLN VAL GLY ASP 
LYS PRO ARG PRO LYS THR LEU PHE GLU PRO 
GLY GLU MET VAL ARG VAL ASN ASP GLY PRO 
PHE ALA ASP PHE ASN GLY VAL VAL GLU GLU 
VAL ASP TYR GLU LYS SER ARG LEU LYS VAL 
SER VAL SER ILE PHE GLY ARG ALA THR PRO 
VAL GLU LEU ASP PHE SER GLN VAL GLU LYS 
ALA
"""
patch_list=[]
seqType='prot'
seqSplit = seq.split()
#print "finished reading ["+`len(seqSplit)`+"] residue(s) for a ["+seqType+"] type segi: ["+segName+"]"
