segName='   B'
seq="""
MET ALA SER PRO LEU ASP GLN ALA ILE GLY 
LEU LEU ILE GLY ILE PHE HIS LYS TYR SER 
GLY LYS GLU GLY ASP LYS HIS THR LEU SER 
LYS LYS GLU LEU LYS GLU LEU ILE GLN LYS 
GLU LEU THR ILE GLY SER LYS LEU GLN ASP 
ALA GLU ILE VAL LYS LEU MET ASP ASP LEU 
ASP ARG ASN LYS ASP GLN GLU VAL ASN PHE 
GLN GLU TYR ILE THR PHE LEU GLY ALA LEU 
ALA MET ILE TYR ASN GLU ALA LEU LYS GLY 
"""
patch_list=[]
seqType='prot'
seqSplit = seq.split()
#print "finished reading ["+`len(seqSplit)`+"] residue(s) for a ["+seqType+"] type segi: ["+segName+"]"
