segName='   A'
seq="""
MET ASN CYS VAL CYS GLY SER GLY LYS THR 
TYR ASP ASP CYS CYS GLY PRO LEU LEU ALA 
ARG THR ARG SER ALA ALA SER PRO GLU ALA 
LEU MET ARG SER ARG TYR ALA ALA TYR ALA 
LEU LYS ASP PHE ASP TYR ILE VAL GLU THR 
THR ASP PRO GLU ARG ARG ASP LEU PHE ASP 
HIS ASP VAL ASN ARG ALA TRP MET GLU GLU 
SER ASP PHE LEU GLU LEU ARG VAL LEU GLY 
SER SER GLU LYS GLY SER ARG GLY THR VAL 
GLU PHE ILE ALA ARG PHE ARG ARG GLY GLY 
GLY PRO GLU GLN SER HIS HIS GLU ARG SER 
GLN PHE ARG LYS ALA ARG GLY ARG TRP TYR 
PHE SER GLU GLY GLU ALA VAL ASP
"""
patch_list=[]
seqType='prot'
seqSplit = seq.split()
#print "finished reading ["+`len(seqSplit)`+"] residue(s) for a ["+seqType+"] type segi: ["+segName+"]"
