segName='   A'
seq="""
MET ALA THR PRO TRP SER GLY TYR LEU ASP 
ASP VAL SER ALA LYS PHE ASP THR GLY VAL 
ASP ASN LEU GLN THR GLN VAL THR GLU ALA 
LEU ASP LYS LEU ALA ALA LYS PRO SER ASP 
PRO ALA LEU LEU ALA ALA TYR GLN SER LYS 
LEU SER GLU TYR ASN LEU TYR ARG ASN ALA 
GLN SER ASN THR VAL LYS VAL PHE LYS ASP 
ILE ASP ALA ALA ILE LEU GLU HIS HIS HIS 
HIS HIS HIS
"""
patch_list=[]
seqType='prot'
seqSplit = seq.split()
#print "finished reading ["+`len(seqSplit)`+"] residue(s) for a ["+seqType+"] type segi: ["+segName+"]"
