segName='   A'
seq="""
MET GLY ASP VAL SER LYS LEU SER SER ASN 
GLN VAL LYS LEU LEU GLU THR ALA PHE ARG 
ASP PHE GLU THR PRO GLU GLY SER GLY ARG 
VAL SER THR ASP GLN ILE GLY ILE ILE LEU 
GLU VAL LEU GLY ILE GLN GLN THR LYS SER 
THR ILE ARG GLN LEU ILE ASP GLU PHE ASP 
PRO PHE GLY ASN GLY ASP ILE ASP PHE ASP 
SER PHE LYS ILE ILE GLY ALA ARG PHE LEU 
GLY GLU GLU VAL ASN PRO GLU GLN MET GLN 
GLN GLU LEU ARG GLU ALA PHE ARG LEU TYR 
ASP LYS GLU GLY ASN GLY TYR ILE SER THR 
ASP VAL MET ARG GLU ILE LEU ALA GLU LEU 
ASP GLU THR LEU SER SER GLU ASP LEU ASP 
ALA MET ILE ASP GLU ILE ASP ALA ASP GLY 
SER GLY THR VAL ASP PHE GLU GLU PHE MET 
GLY VAL MET THR GLY GLY ASP GLU
"""
patch_list=[]
seqType='prot'
seqSplit = seq.split()
#print "finished reading ["+`len(seqSplit)`+"] residue(s) for a ["+seqType+"] type segi: ["+segName+"]"
