segName='   A'
seq="""
ALA PHE SER GLY THR TRP GLN VAL TYR ALA 
GLN GLU ASN TYR GLU GLU PHE LEU LYS ALA 
LEU ALA LEU PRO GLU ASP LEU ILE LYS MET 
ALA ARG ASP ILE LYS PRO ILE VAL GLU ILE 
GLN GLN LYS GLY ASP ASP PHE VAL VAL THR 
SER LYS THR PRO ARG GLN THR VAL THR ASN 
SER PHE THR LEU GLY LYS GLU ALA ASP ILE 
THR THR MET ASP GLY LYS LYS LEU LYS CYS 
THR VAL HIS LEU ALA ASN GLY LYS LEU VAL 
THR LYS SER GLU LYS PHE SER HIS GLU GLN 
GLU VAL LYS GLY ASN GLU MET VAL GLU THR 
ILE THR PHE GLY GLY VAL THR LEU ILE ARG 
ARG SER LYS ARG VAL
"""
patch_list=[]
seqType='prot'
seqSplit = seq.split()
#print "finished reading ["+`len(seqSplit)`+"] residue(s) for a ["+seqType+"] type segi: ["+segName+"]"
